Smo98330 (PACid_15412854)


Aliases : PACid_15412854

Description : 28.1 DNA.synthesis/chromatin structure Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. topoisomerase II (TOPII) CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase II, eukaryotic-type (InterPro:IPR001154), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760) BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1) Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12 Bacteria - 1396 Metazoa - 17338 Fungi - 3422 Plants - 5037 Viruses - 0 Other Eukaryotes - 2996 (source: NCBI BLink). & (o24308|top2_pea : 1527.0


Gene families : OG_01_0004172 (Gene family) Phylogenetic Tree(s): OG0004172_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo98330
Cluster HCCA cluster: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT3G23890 TOPII, ATTOPII topoisomerase II 0.1 Gene family
Cpa|evm.model.tig00021432.55 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.02 Gene family
Cpa|evm.model.tig00021433.2 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.04 Gene family
Cre01.g009250 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
GSVIVT01032138001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.1 Gene family
LOC_Os02g47150 Os02g0699700 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
MA_133272g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.04 Gene family
MA_6634g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
Solyc01g087500.3.1 Solyc01g087500.3 28.1 DNA.synthesis/chromatin structure Encodes a... 0.1 Gene family
Zm00001d017720 GRMZM2G021270 28.1 DNA.synthesis/chromatin structure Encodes a... 0.07 Gene family
Zm00001d051542 GRMZM2G121210 28.1 DNA.synthesis/chromatin structure Encodes a... 0.09 Gene family

Type GO Term Name Evidence Source
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003594 HATPase_C 61 208
No external refs found!