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  5. Msp_g48089

Msp_g48089


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g48089

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00230510 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14820 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.05 OrthoFinder output from all 47 species
Ehy_g15250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022608001 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01023271001 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.06 OrthoFinder output from all 47 species
Gb_40990 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10425930g0020 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_97917g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Sam_g14582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g006710.4.1 Solyc01g006710 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004181 metallocarboxypeptidase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 689 774
IPR011709 DEAD-box_helicase_OB_fold 847 928
IPR001650 Helicase_C 497 625
IPR011545 DEAD/DEAH_box_helicase_dom 241 394
No external refs found!