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  5. Msp_g47722

Msp_g47722


Description : component *(LUG/LUH) of transcriptional co-repressor complex & original description: none


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g47722

Target Alias Description ECC score Gene Family Method Actions
Adi_g107387 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0042.g026935 No alias not classified & original description: CDS=339-5477 0.03 OrthoFinder output from all 47 species
Ceric.07G070900.1 Ceric.07G070900 not classified & original description: pacid=50626059... 0.03 OrthoFinder output from all 47 species
GSVIVT01035878001 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g05749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_9624g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ore_g29897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016184 No alias not classified & original description: CDS=189-5282 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 836 947
IPR002083 MATH/TRAF_dom 342 463
IPR002083 MATH/TRAF_dom 685 792
No external refs found!