Smo96927 (PACid_15411604)


Aliases : PACid_15411604

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein embryo defective 2758 (EMB2758) INVOLVED IN: embryo development ending in seed dormancy LOCATED IN: mitochondrion EXPRESSED IN: shoot apex, embryo EXPRESSED DURING: D bilateral stage CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885) BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo96927
Cluster HCCA cluster: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
GSVIVT01003256001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
GSVIVT01021023001 No alias No description available 0.02 Gene family
GSVIVT01025639001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
GSVIVT01036511001 No alias No description available 0.02 Gene family
GSVIVT01036788001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g72930 Os01g0959600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
LOC_Os03g16450 Os03g0271300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
LOC_Os08g38610 Os08g0494200,... No description available 0.02 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.02 Gene family
LOC_Os12g06650 Os12g0163600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_10426444g0010 No alias No description available 0.02 Gene family
MA_10429540g0020 No alias No description available 0.01 Gene family
MA_136326g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_14938g0010 No alias No description available 0.02 Gene family
MA_17949g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_20782g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_33151g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_39263g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_67032g0010 No alias No description available 0.02 Gene family
MA_8210920g0010 No alias No description available 0.01 Gene family
MA_82595g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
MA_96662g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Solyc01g007850.2.1 Solyc01g007850.2 No description available 0.02 Gene family
Solyc01g081560.2.1 Solyc01g081560.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g095690.2.1 Solyc01g095690.2 No description available 0.02 Gene family
Solyc03g114010.2.1 Solyc03g114010.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Solyc07g008480.2.1 Solyc07g008480.2 No description available 0.02 Gene family
Solyc10g005090.3.1 Solyc10g005090.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.02 Gene family
Zm00001d003786 GRMZM2G153275 No description available 0.01 Gene family
Zm00001d013136 GRMZM5G892151 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d016828 GRMZM2G165521 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d023525 GRMZM2G001466 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Zm00001d052794 GRMZM2G140600 No description available 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 440 468
No external refs found!