Smo94273 (PACid_15422737)


Aliases : PACid_15422737

Description : 29.5.11.20 protein.degradation.ubiquitin.proteasom Encodes 20S proteasome beta subunit PBF1 (PBF1). PBF1 FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity INVOLVED IN: defense response to fungus, incompatible interaction, ubiquitin-dependent protein catabolic process LOCATED IN: proteasome core complex, proteasome complex EXPRESSED IN: 22 plant structures EXPRESSED DURING: 14 growth stages CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353) BEST Arabidopsis thaliana protein match is: proteasome beta subunit C1 (TAIR:AT1G21720.1). & (chl4|522780 : 98.2


Gene families : OG_01_0003741 (Gene family) Phylogenetic Tree(s): OG0003741_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo94273
Cluster HCCA cluster: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT3G60820 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.04 Gene family
Cpa|evm.model.tig00001339.5 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
Cre26.g756797 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
GSVIVT01027613001 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
LOC_Os09g32800 Os09g0505600 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
MA_207139g0010 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.03 Gene family
Solyc02g084920.3.1 Solyc02g084920.3 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
Zm00001d006085 GRMZM5G817037 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.04 Gene family
Zm00001d021051 GRMZM2G074386 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 16 211
No external refs found!