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  5. AMTR_s00019p00130680

AMTR_s00019p00130680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.110

Description : Cell wall.pectin.modification and degradation.pectin lyase


Gene families : OG_01_0000535 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000535_tree ,
OG_02_0000281 (LandPlants) Phylogenetic Tree(s): OG_02_0000281_tree ,
OG_03_0000124 (SeedPlants) Phylogenetic Tree(s): OG_03_0000124_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00130680
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 Archaeplastida
AMTR_s00026p00068270 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G02790 PGA4 polygalacturonase 4 0.05 Archaeplastida
AT3G07820 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT5G48140 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01028044001 No alias Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.04 Archaeplastida
LOC_Os01g33300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 Archaeplastida
LOC_Os06g35320.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 Archaeplastida
LOC_Os06g40890.1 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 Archaeplastida
Zm00001e025021_P003 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 Archaeplastida
Zm00001e030536_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e042518_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
AMTR_s00026p00068270 evm_27.TU.AmTr_v1... No description available 0.03 LandPlants
Zm00001e030536_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e042518_P001 No alias no hits & (original description: none) 0.02 LandPlants
AMTR_s00026p00068270 evm_27.TU.AmTr_v1... No description available 0.03 SeedPlants
AT3G07840 No alias Pectin lyase-like superfamily protein 0.02 SeedPlants
LOC_Os06g35300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.02 SeedPlants
LOC_Os06g35370.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 SeedPlants
Zm00001e014066_P002 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 SeedPlants
Zm00001e030536_P001 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e042518_P001 No alias no hits & (original description: none) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 41 370
No external refs found!