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  5. Msp_g42997

Msp_g42997


Description : not classified & original description: none


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g42997
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00194260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g07590,... 0.02 OrthoFinder output from all 47 species
Ehy_g03895 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g19548.1 LOC_Os01g19548 Pentatricopeptide repeat-containing protein At1g02370,... 0.02 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.03 OrthoFinder output from all 47 species
LOC_Os07g40750.1 LOC_Os07g40750 Pentatricopeptide repeat-containing protein At4g21705,... 0.02 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.02 OrthoFinder output from all 47 species
LOC_Os10g35760.2 LOC_Os10g35760 Pentatricopeptide repeat-containing protein At2g20710,... 0.02 OrthoFinder output from all 47 species
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_777619g0010 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
Smo406783 PPR596 Pentatricopeptide repeat-containing protein At1g80270,... 0.02 OrthoFinder output from all 47 species
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.04 OrthoFinder output from all 47 species
Smo421992 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.02 OrthoFinder output from all 47 species
Tin_g08732 No alias RNA ediTing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 451 475
IPR002885 Pentatricopeptide_repeat 417 442
IPR002885 Pentatricopeptide_repeat 259 314
No external refs found!