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  5. Msp_g42960

Msp_g42960


Description : not classified & original description: none


Gene families : OG0009838 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009838_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g42960

Target Alias Description ECC score Gene Family Method Actions
Aop_g68100 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g37578 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11094 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 55 77
IPR002885 Pentatricopeptide_repeat 261 281
IPR002885 Pentatricopeptide_repeat 157 181
IPR002885 Pentatricopeptide_repeat 83 113
IPR002885 Pentatricopeptide_repeat 182 230
No external refs found!