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  5. Msp_g42742

Msp_g42742 (ATKRS-1)


Aliases : ATKRS-1

Description : not classified & original description: none


Gene families : OG0003653 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003653_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g42742

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00070350 ATKRS-1,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Als_g02496 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Cre03.g160500 ATKRS-1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
MA_10429295g0010 ATKRS-1 lysine-tRNA ligase 0.02 OrthoFinder output from all 47 species
MA_126835g0010 ATKRS-1 Lysine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp4g22190.1 ATKRS-1 lysine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Nbi_g12824 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004181 metallocarboxypeptidase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR004364 Aa-tRNA-synt_II 250 339
IPR004365 NA-bd_OB_tRNA 126 207
No external refs found!