Smo92304 (PACid_15417565)


Aliases : PACid_15417565

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. plant U-box 13 (PUB13) CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024) BEST Arabidopsis thaliana protein match is: PLANT U-BOX 12 (TAIR:AT2G28830.1) Has 8308 Blast hits to 5676 proteins in 314 species: Archae - 6 Bacteria - 52 Metazoa - 2498 Fungi - 809 Plants - 4013 Viruses - 3 Other Eukaryotes - 927 (source: NCBI BLink). & (loc_os06g01304.2 : 102.0


Gene families : OG_01_0000079 (Gene family) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo92304
Cluster HCCA cluster: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01006112001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
MA_779502g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
MA_95662g0020 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.01 Gene family
Zm00001d024672 GRMZM2G304010 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0016567 protein ubiquitination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 83
No external refs found!