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  5. Msp_g42189

Msp_g42189


Description : not classified & original description: none


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g42189

Target Alias Description ECC score Gene Family Method Actions
AT1G33680 No alias KH domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g013153 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g023605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene69176.t1 Aspi01Gene69176 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11627 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11741 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036378001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_04922 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g24459 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_13061g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g07780.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g63768 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g040370.2.1 Solyc11g040370 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g39488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e021868_P005 Zm00001e021868 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 382 446
IPR004088 KH_dom_type_1 288 352
No external refs found!