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  5. Msp_g40828

Msp_g40828


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g40828
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Adi_g014847 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g08080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11948 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g20462 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05068 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19099 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g042984 No alias not classified & original description: CDS=1-3306 0.05 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.03 OrthoFinder output from all 47 species
Azfi_s0178.g056215 No alias not classified & original description: CDS=1-2514 0.04 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.03 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.03 OrthoFinder output from all 47 species
Azfi_s0451.g070770 No alias not classified & original description: CDS=1-2109 0.03 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.03 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.03 OrthoFinder output from all 47 species
Cba_g07456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19873 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67232 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G033500.1 Ceric.03G033500 not classified & original description: pacid=50573115... 0.04 OrthoFinder output from all 47 species
Ceric.17G052300.1 Ceric.17G052300 not classified & original description: pacid=50618191... 0.04 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.03 OrthoFinder output from all 47 species
Dac_g44957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05383 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g06991 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25609 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14783 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g58364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16774 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29540 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g34507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g01227 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17300 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g24806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19389 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22424 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02291 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07034 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10319 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19560 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02232 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55632 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005758 No alias not classified & original description: CDS=1-2499 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019766 No alias not classified & original description: CDS=1-3048 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0238.g026585 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2277 0.03 OrthoFinder output from all 47 species
Spa_g06738 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18575 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25854 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56054 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56098 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56966 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00665 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04732 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15075 DOT4 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 174 220
IPR002885 Pentatricopeptide_repeat 275 312
IPR002885 Pentatricopeptide_repeat 389 435
IPR002885 Pentatricopeptide_repeat 249 269
IPR002885 Pentatricopeptide_repeat 507 534
IPR002885 Pentatricopeptide_repeat 479 502
No external refs found!