Smo90666 (PACid_15414232)


Aliases : PACid_15414232

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. plant U-box 38 (PUB38) FUNCTIONS IN: ubiquitin-protein ligase activity INVOLVED IN: protein ubiquitination LOCATED IN: ubiquitin ligase complex EXPRESSED IN: stem CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024) BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT5G62560.1) Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0 Bacteria - 0 Metazoa - 736 Fungi - 347 Plants - 385 Viruses - 0 Other Eukaryotes - 339 (source: NCBI BLink). & (q64ha9|spl11_orysa : 113.0


Gene families : OG_01_0002750 (Gene family) Phylogenetic Tree(s): OG0002750_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo90666
Cluster HCCA cluster: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT3G47820 PUB39 PLANT U-BOX 39 0.02 Gene family
AT5G40140 No alias RING/U-box superfamily protein with ARM repeat domain 0.02 Gene family
LOC_Os06g13090 Os06g0238200 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
LOC_Os09g21740 Os09g0386200 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
Solyc03g113870.1.1 Solyc03g113870.1 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d020358 GRMZM2G100090 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0016567 protein ubiquitination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 39 106
No external refs found!