Smo90560 (PACid_15413438)

Aliases : PACid_15413438

Description : 28.2 DNA.repair Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif. Y-family DNA polymerase H (POLH) CONTAINS InterPro DOMAIN/s: DNA polymerase eta (InterPro:IPR017061), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963) BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1) Has 8088 Blast hits to 8015 proteins in 2292 species: Archae - 210 Bacteria - 5635 Metazoa - 500 Fungi - 401 Plants - 163 Viruses - 3 Other Eukaryotes - 1176 (source: NCBI BLink). & (loc_os01g55300.4 : 484.0

Gene families : OG_01_0001366 (Gene family) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Smo90560
Cluster	HCCA cluster: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre07.g338602	No alias	No description available	0.01	Gene family
Zm00001d023711	No alias	28.2 DNA.repair Y-family DNA polymerase. Catalyses...	0.01	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR017961	DNA_pol_Y-fam_little_finger	304	437

External Links

No external refs found!

Smo90560 (PACid_15413438)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation