Smo90332 (PACid_15411817)


Aliases : PACid_15411817

Description : 10.7 cell wall.modification member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. EXP3 INVOLVED IN: in 6 processes LOCATED IN: endomembrane system, extracellular region EXPRESSED IN: 21 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117) BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1) Has 2147 Blast hits to 2144 proteins in 153 species: Archae - 0 Bacteria - 2 Metazoa - 0 Fungi - 34 Plants - 2079 Viruses - 0 Other Eukaryotes - 32 (source: NCBI BLink). & (chl4|516806 : 82.4


Gene families : OG_01_0000017 (Gene family) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo90332
Cluster HCCA cluster: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.02 Gene family
AT2G40610 EXPA8, ATHEXP... expansin A8 0.02 Gene family
AT3G29030 EXP5, ATHEXP... expansin A5 0.02 Gene family
MA_10020g0010 No alias 10.7 cell wall.modification Encodes an expansin. Naming... 0.02 Gene family
Solyc05g007830.3.1 Solyc05g007830.3 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007117 Expansin_CBD 149 226
No external refs found!