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  5. Msp_g38999

Msp_g38999


Description : component *(RPP1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g38999
Cluster HCCA: Cluster_82

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    1. Home
    2. Species
    3. Pyrrosia piloselloides
      Target Alias Description ECC score Gene Family Method Actions
      AMTR_s00004p00113490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
      AT4G00810 No alias 60S acidic ribosomal protein family 0.04 OrthoFinder output from all 47 species
      Adi_g041466 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
      Adi_g082392 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
      Ala_g09776 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      Als_g25252 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Als_g64094 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Aob_g32534 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Aop_g22529 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Aop_g46228 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      Aop_g56426 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      Aop_g71102 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      Azfi_s0068.g036426 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Cba_g39390 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      Cba_g54064 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
      Ceric.21G004600.1 Ceric.21G004600 component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Cre17.g738300 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
      Dcu_g11087 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
      Dcu_g26924 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
      Dcu_g28486 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Dcu_g44945 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
      Dcu_g51469 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      GSVIVT01019679001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
      GSVIVT01038637001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
      LOC_Os08g02340.1 LOC_Os08g02340 component RPP1 of LSU proteome component 0.05 OrthoFinder output from all 47 species
      Lfl_g08838 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Lfl_g26214 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      MA_10430200g0010 No alias component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species
      MA_90134g0010 No alias component RPP1 of LSU proteome component 0.04 OrthoFinder output from all 47 species
      Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.07 OrthoFinder output from all 47 species
      Msp_g36176 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
      Pp3c1_36220V3.1 Pp3c1_36220 60S acidic ribosomal protein family 0.05 OrthoFinder output from all 47 species
      Pp3c20_2800V3.1 Pp3c20_2800 60S acidic ribosomal protein family 0.05 OrthoFinder output from all 47 species
      Pp3c23_18100V3.1 Pp3c23_18100 60S acidic ribosomal protein family 0.03 OrthoFinder output from all 47 species
      Pp3c8_22380V3.1 Pp3c8_22380 60S acidic ribosomal protein family 0.03 OrthoFinder output from all 47 species
      Ppi_g45546 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Sam_g03056 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
      Sam_g05395 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Sam_g20755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
      Sam_g26274 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
      Sam_g31849 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Sam_g32024 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Sam_g44435 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      Sam_g44445 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
      Sam_g47755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
      Sam_g49082 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
      Smo133023 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
      Solyc01g016470.3.1 Solyc01g016470 component RPP1 of LSU proteome component 0.05 OrthoFinder output from all 47 species
      Spa_g42994 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Spa_g45204 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
      Zm00001e029197_P001 Zm00001e029197 component RPP1 of LSU proteome component 0.04 OrthoFinder output from all 47 species

      Type GO Term Name Evidence Source

      No GO annotation available for this sequence
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      Type GO Term Name Evidence Source
      MF GO:0003674 molecular_function IEP HCCA
      MF GO:0003735 structural constituent of ribosome IEP HCCA
      MF GO:0005198 structural molecule activity IEP HCCA
      MF GO:0005488 binding IEP HCCA
      CC GO:0005575 cellular_component IEP HCCA
      CC GO:0005840 ribosome IEP HCCA
      BP GO:0006412 translation IEP HCCA
      BP GO:0006518 peptide metabolic process IEP HCCA
      BP GO:0006807 nitrogen compound metabolic process IEP HCCA
      BP GO:0008152 metabolic process IEP HCCA
      MF GO:0008199 ferric iron binding IEP HCCA
      BP GO:0009058 biosynthetic process IEP HCCA
      BP GO:0009059 macromolecule biosynthetic process IEP HCCA
      BP GO:0009987 cellular process IEP HCCA
      BP GO:0019538 protein metabolic process IEP HCCA
      MF GO:0020037 heme binding IEP HCCA
      BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
      BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
      BP GO:0043043 peptide biosynthetic process IEP HCCA
      BP GO:0043170 macromolecule metabolic process IEP HCCA
      CC GO:0043226 organelle IEP HCCA
      CC GO:0043228 non-membrane-bounded organelle IEP HCCA
      CC GO:0043229 intracellular organelle IEP HCCA
      CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
      BP GO:0043603 amide metabolic process IEP HCCA
      BP GO:0043604 amide biosynthetic process IEP HCCA
      BP GO:0044237 cellular metabolic process IEP HCCA
      BP GO:0044238 primary metabolic process IEP HCCA
      BP GO:0044249 cellular biosynthetic process IEP HCCA
      BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
      BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
      MF GO:0046906 tetrapyrrole binding IEP HCCA
      BP GO:0071704 organic substance metabolic process IEP HCCA
      CC GO:0110165 cellular anatomical entity IEP HCCA
      BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
      BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
      BP GO:1901576 organic substance biosynthetic process IEP HCCA

      No InterPro domains available for this sequence

      No external refs found!