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  5. Msp_g38712

Msp_g38712 (PRP39)


Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g38712

Target Alias Description ECC score Gene Family Method Actions
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g018948 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12647 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11777 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09806 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028422001 PRP39 No description available 0.03 OrthoFinder output from all 47 species
Len_g23571 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Mp6g00560.1 PRP39 pre-mRNA-processing protein (PRP39) 0.04 OrthoFinder output from all 47 species
Pnu_g06717 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g21848 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29159 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11835 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22654 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g03914 AT PRP39-2, PRP39-2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g38613 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56288 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR008847 Suf 2 119
No external refs found!