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  5. Msp_g36441

Msp_g36441


Description : homologous recombination repair exonuclease *(EXO1) & original description: none


Gene families : OG0003251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003251_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g36441

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00265020 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Aop_g05490 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0009.g011947 No alias not classified & original description: CDS=18-1211 0.03 OrthoFinder output from all 47 species
Cba_g16201 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000403.40 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 OrthoFinder output from all 47 species
Cre07.g353950 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 OrthoFinder output from all 47 species
Dac_g38690 No alias homologous recombination repair exonuclease *(EXO1) &... 0.07 OrthoFinder output from all 47 species
GSVIVT01008397001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.11 OrthoFinder output from all 47 species
GSVIVT01021316001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.1 OrthoFinder output from all 47 species
Gb_14686 No alias homologous recombination repair exonuclease (EXO1) 0.07 OrthoFinder output from all 47 species
LOC_Os01g56940.1 LOC_Os01g56940 homologous recombination repair exonuclease (EXO1) 0.03 OrthoFinder output from all 47 species
MA_10431686g0010 No alias homologous recombination repair exonuclease (EXO1) 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014655 No alias homologous recombination repair exonuclease *(EXO1) &... 0.05 OrthoFinder output from all 47 species
Sam_g35172 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc02g071530.2.1 Solyc02g071530 homologous recombination repair exonuclease (EXO1) 0.07 OrthoFinder output from all 47 species
Solyc03g119070.2.1 Solyc03g119070 homologous recombination repair exonuclease (EXO1) 0.07 OrthoFinder output from all 47 species
Spa_g51609 No alias homologous recombination repair exonuclease *(EXO1) &... 0.03 OrthoFinder output from all 47 species
Tin_g11001 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Zm00001e019645_P001 Zm00001e019645 homologous recombination repair exonuclease (EXO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 168 252
IPR006085 XPG_DNA_repair_N 27 122
No external refs found!