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  5. Msp_g36236

Msp_g36236 (CHR24)


Aliases : CHR24

Description : chromatin remodeling factor *(ERCC6) & original description: none


Gene families : OG0005354 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005354_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g36236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00159p00042980 CHR24,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cre03.g183350 CHR24 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_17075 CHR24 chromatin remodeling factor (ERCC6) 0.03 OrthoFinder output from all 47 species
LOC_Os04g59624.2 CHR24, LOC_Os04g59624 chromatin remodeling factor (ERCC6) 0.07 OrthoFinder output from all 47 species
Lfl_g19269 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.03 OrthoFinder output from all 47 species
MA_18372g0010 CHR24 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp1g29760.1 CHR24 chromatin remodeling factor (ERCC6) 0.02 OrthoFinder output from all 47 species
Nbi_g03168 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g068280.3.1 CHR24, Solyc01g068280 chromatin remodeling factor (ERCC6) 0.04 OrthoFinder output from all 47 species
Spa_g24729 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g19329 CHR24 chromaTin remodeling factor *(ERCC6) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 621 733
IPR000330 SNF2_N 277 569
No external refs found!