Smo86110 (PACid_15420555)


Aliases : PACid_15420555

Description : 27.1.20 RNA.processing.degradation dicer Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. dicer-like 1 (DCL1) CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021) BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1). & (loc_os03g02970.1 : 2086.0


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo86110
Cluster HCCA cluster: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.02 Gene family
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.02 Gene family
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.03 Gene family
Cpa|evm.model.tig00000741.31 No alias No description available 0.01 Gene family
LOC_Os01g68120 Os01g0909200 No description available 0.02 Gene family
LOC_Os04g43050 Os04g0509300 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
MA_10437243g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
MA_10437243g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Solyc07g005030.3.1 Solyc07g005030.3 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Solyc08g067210.3.1 Solyc08g067210.3 No description available 0.03 Gene family
Solyc11g008540.2.1 Solyc11g008540.2 27.1.20 RNA.processing.degradation dicer Encodes a... 0.02 Gene family
Zm00001d013796 GRMZM2G301405 27.1.20 RNA.processing.degradation dicer Encodes a... 0.03 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000999 RNase_III_dom 1190 1343
No external refs found!