Msp_g35056 (PUB26)

Aliases : PUB26

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g35056

Target	Alias	Description	ECC score	Gene Family Method
AT3G52450	PUB22	plant U-box 22	0.01	OrthoFinder output from all 47 species
Adi_g003285	PUB25	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g014414	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g077173	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g04583	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g16119	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g21197	PUB25	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g05204	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g06990	PUB23	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Als_g23185	CMPG1, ATCMPG1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g23643	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33086	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g47570	PUB25	E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
Als_g61569	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g62359	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene19350.t1	PUB26, Aspi01Gene19350	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27391.t1	PUB26, Aspi01Gene27391	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene51624.t1	PUB15, Aspi01Gene51624	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g78214	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.08G042000.1	Ceric.08G042000	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.24G024900.1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g14166	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g38952	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
GSVIVT01026542001	CMPG2, ATCMPG2	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_02629	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os02g34410.1	PUB25, LOC_Os02g34410	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os04g58920.1	PUB23, LOC_Os04g58920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Lfl_g24284	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10432981g0010	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_33190g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp7g11020.1	PUB25	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Msp_g25038	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g09512	PUB29, ATPUB29	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g37574	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g42860	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g00718	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
Pnu_g04507	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Solyc05g056500.1.1	PUB26, Solyc05g056500	U-box domain-containing protein 26 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Spa_g00706	PUB23	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g57248	PUB29, ATPUB29	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g40733	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006484_P001	PUB23, Zm00001e006484	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e014752_P001	PUB23, Zm00001e014752	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Zm00001e015763_P001	Zm00001e015763	U-box domain-containing protein 21 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Zm00001e019173_P001	PUB23, Zm00001e019173	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e039417_P001	PUB23, Zm00001e039417	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	84

External Links

No external refs found!

Msp_g35056 (PUB26)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation