AMTR_s00019p00039970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.19

Description : Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0008852 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008852_tree ,
OG_02_0008546 (LandPlants) Phylogenetic Tree(s): OG_02_0008546_tree ,
OG_03_0005697 (SeedPlants) Phylogenetic Tree(s): OG_03_0005697_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00039970
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AT4G31850 PGR3 proton gradient regulation 3 0.04 Archaeplastida
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 Archaeplastida
AT4G31850 PGR3 proton gradient regulation 3 0.04 LandPlants
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 LandPlants
LOC_Os10g28600.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 LandPlants
Solyc04g015440.4.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 LandPlants
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 LandPlants
AT4G31850 PGR3 proton gradient regulation 3 0.03 SeedPlants
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 SeedPlants
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 SeedPlants
LOC_Os10g28600.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 SeedPlants
Solyc04g015440.4.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 SeedPlants
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 899 930
IPR002885 Pentatricopeptide_repeat 303 335
IPR002885 Pentatricopeptide_repeat 584 614
IPR002885 Pentatricopeptide_repeat 344 373
IPR002885 Pentatricopeptide_repeat 484 514
IPR002885 Pentatricopeptide_repeat 204 234
IPR002885 Pentatricopeptide_repeat 449 479
IPR002885 Pentatricopeptide_repeat 621 670
IPR002885 Pentatricopeptide_repeat 240 282
IPR002885 Pentatricopeptide_repeat 770 809
IPR002885 Pentatricopeptide_repeat 1076 1116
IPR002885 Pentatricopeptide_repeat 1006 1050
IPR002885 Pentatricopeptide_repeat 831 879
IPR002885 Pentatricopeptide_repeat 377 424
IPR002885 Pentatricopeptide_repeat 939 984
IPR002885 Pentatricopeptide_repeat 516 564
No external refs found!