Msp_g34496


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g34496

Target Alias Description ECC score Gene Family Method Actions
Als_g06065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04440 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04618 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17428 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17445 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g30400 DOT4 ssDNA-binding protein *(OSB) & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g33592 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38453 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68127 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene70773.t1 OTP84, Aspi01Gene70773 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G124700.1 Ceric.01G124700 not classified & original description: pacid=50591887... 0.04 OrthoFinder output from all 47 species
Ceric.14G067900.1 CRR22, Ceric.14G067900 not classified & original description: pacid=50634625... 0.03 OrthoFinder output from all 47 species
Ceric.20G007900.1 Ceric.20G007900 not classified & original description: pacid=50566810... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.200 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g03843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05692 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g06637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g16356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23537 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25258 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g25289 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g31874 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42747 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22519 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g26019 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025639001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g18295 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18576 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g54471 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g31355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17452 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10308 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13575 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57319 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57991 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g03223 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g051780.3.1 Solyc03g051780 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Spa_g07311 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g11708 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g13790 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14979 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15467 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16047 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20184 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20467 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20468 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g21634 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g22684 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g22729 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22969 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22980 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23609 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23972 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25998 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26518 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27467 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g33276 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33277 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33289 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39519 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45297 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46893 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g47078 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55201 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g55551 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 18 65
IPR002885 Pentatricopeptide_repeat 223 269
IPR002885 Pentatricopeptide_repeat 121 167
IPR002885 Pentatricopeptide_repeat 197 220
IPR002885 Pentatricopeptide_repeat 95 119
No external refs found!