Msp_g34200


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g34200

Target Alias Description ECC score Gene Family Method Actions
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004418 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17031 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19869 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04184 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01194.t1 Aspi01Gene01194 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01199.t1 OTP86, Aspi01Gene01199 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24209.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34786.t1 Aspi01Gene34786 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49892.t1 Aspi01Gene49892 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0083.g038857 No alias not classified & original description: CDS=1-2421 0.05 OrthoFinder output from all 47 species
Cba_g06580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18955 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23295 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g38695 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g21836 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g23525 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63397 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55534 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.04 OrthoFinder output from all 47 species
Spa_g18196 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23950 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18985 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20109 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g21261 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23095 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g30551 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g39845 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 60 106
IPR002885 Pentatricopeptide_repeat 135 157
No external refs found!