Smo83983 (PACid_15418044)


Aliases : PACid_15418044

Description : 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX Member of TLP family tubby like protein 3 (TLP3) FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity INVOLVED IN: regulation of transcription LOCATED IN: cellular_component unknown EXPRESSED IN: 22 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal (InterPro:IPR000007) BEST Arabidopsis thaliana protein match is: tubby-like protein 9 (TAIR:AT3G06380.1). & (loc_os05g36190.1 : 481.0


Gene families : OG_01_0000188 (Gene family) Phylogenetic Tree(s): OG0000188_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo83983
Cluster HCCA cluster: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AT1G43640 AtTLP5, TLP5 tubby like protein 5 0.02 Gene family
GSVIVT01010999001 No alias 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX... 0.02 Gene family
GSVIVT01034528001 No alias 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX... 0.02 Gene family
LOC_Os03g22800 Os03g0351400 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX... 0.03 Gene family
LOC_Os07g47110 Os07g0667000 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX... 0.02 Gene family
Solyc02g062670.3.1 Solyc02g062670.3 31.1 cell.organisation Member of TLP family tubby like... 0.02 Gene family
Solyc10g046970.2.1 Solyc10g046970.2 27.3 RNA.regulation of transcription Member of TLP... 0.03 Gene family
Zm00001d023523 GRMZM2G001272,... 31.1 cell.organisation Member of TLP family tubby like... 0.02 Gene family
Zm00001d051568 GRMZM2G176340 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000007 Tubby_C 133 425
No external refs found!