Msp_g31553 (CDC48B)

Aliases : CDC48B

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g31553

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00154p00076410	CDC48B,...	Cell division control protein 48 homolog B...	0.03	OrthoFinder output from all 47 species
Adi_g054679	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02580	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g77518	No alias	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000525.10	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Dcu_g04096	CIP111	platform ATPase CDC48 & original description: none	0.06	OrthoFinder output from all 47 species
LOC_Os11g11340.1	CIP111, LOC_Os11g11340	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Lfl_g33871	CIP111	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Mp3g20500.1	CDC48B	Cell division control protein 48 homolog B...	0.03	OrthoFinder output from all 47 species
Nbi_g44449	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g13016	CIP111	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003606	CDC48B	not classified & original description: CDS=1-618	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	217	254
IPR041569	AAA_lid_3	487	531
IPR003959	ATPase_AAA_core	58	193
IPR003959	ATPase_AAA_core	328	464

External Links

No external refs found!