Msp_g28762


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g28762

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242080 CRR28,... Pentatricopeptide repeat-containing protein At1g59720,... 0.02 OrthoFinder output from all 47 species
Ala_g16974 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g34749 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g07960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23798 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28392 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g30401 DOT4 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g32927 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0016.g014413 No alias not classified & original description: CDS=1-1530 0.06 OrthoFinder output from all 47 species
Cba_g15366 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g19568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20741 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g26306 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g67204 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G028200.1 OTP84, Ceric.02G028200 not classified & original description: pacid=50583866... 0.06 OrthoFinder output from all 47 species
Ceric.06G033000.1 Ceric.06G033000 not classified & original description: pacid=50620249... 0.04 OrthoFinder output from all 47 species
Ceric.13G031800.1 Ceric.13G031800 not classified & original description: pacid=50636627... 0.04 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.08 OrthoFinder output from all 47 species
Ceric.31G032600.1 CRR22, Ceric.31G032600 not classified & original description: pacid=50574071... 0.05 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.08 OrthoFinder output from all 47 species
Dcu_g08698 EMB2744 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g11730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09249 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012201001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.07 OrthoFinder output from all 47 species
GSVIVT01015468001 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.05 OrthoFinder output from all 47 species
GSVIVT01017209001 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01017378001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
GSVIVT01021246001 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 OrthoFinder output from all 47 species
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
GSVIVT01036207001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
GSVIVT01036943001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species
GSVIVT01037332001 CRR22 Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 47 species
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.06 OrthoFinder output from all 47 species
Gb_18462 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 OrthoFinder output from all 47 species
LOC_Os08g38610.1 LOC_Os08g38610 Pentatricopeptide repeat-containing protein At1g26900,... 0.03 OrthoFinder output from all 47 species
Len_g44132 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54307 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g56738 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434740g0010 OSB1 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
MA_3502g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.08 OrthoFinder output from all 47 species
MA_953793g0020 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Msp_g46846 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g20126 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g19965 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g23595 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03881 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05208 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05910 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07547 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g32530 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g49408 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53925 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g60900 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013552 No alias not classified & original description: CDS=1-2598 0.04 OrthoFinder output from all 47 species
Sam_g51734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105197 CRR22 Pentatricopeptide repeat-containing protein At3g49710... 0.03 OrthoFinder output from all 47 species
Smo61782 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Smo76916 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Solyc01g007850.2.1 Solyc01g007850 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc01g095690.2.1 Solyc01g095690 Pentatricopeptide repeat-containing protein At4g01030,... 0.03 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.02 OrthoFinder output from all 47 species
Spa_g06116 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17519 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50540 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53483 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05979 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g23441 No alias not classified & original description: none 0.15 OrthoFinder output from all 47 species
Tin_g26996 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.05 OrthoFinder output from all 47 species
Zm00001e024311_P001 Zm00001e024311 Pentatricopeptide repeat-containing protein At1g09410,... 0.04 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR046848 E_motif 129 186
IPR002885 Pentatricopeptide_repeat 84 112
IPR002885 Pentatricopeptide_repeat 9 56
No external refs found!