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  5. Msp_g28020

Msp_g28020 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g28020

Target Alias Description ECC score Gene Family Method Actions
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g015421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052537 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16565 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36200 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05133 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14923 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32003 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02534 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16000 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g30401 DOT4 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g32918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33111 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g40212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g65854 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67654 No alias ssDNA-binding protein *(OSB) & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g68114 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g21419 EMB2744 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g04194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15087 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18289 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g31750 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g33014 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g36005 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g38568 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43221 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g21990 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28526 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09279 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18961 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18998 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56481 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g06676 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g38033 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g22913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25984 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34466 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34512 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g40961 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g47672 EMB2758 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g11485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20197 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20260 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20492 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22160 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28126 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38648 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g39284 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10306 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g51366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09254 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13105 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g39647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.02 OrthoFinder output from all 47 species
Sam_g14049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Spa_g08793 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24048 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30211 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g32763 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47167 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53131 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53369 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g18799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016757 glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 652 725
IPR046848 E_motif 542 604
IPR002885 Pentatricopeptide_repeat 224 270
IPR002885 Pentatricopeptide_repeat 123 167
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 426 473
IPR002885 Pentatricopeptide_repeat 328 356
IPR002885 Pentatricopeptide_repeat 299 321
IPR002885 Pentatricopeptide_repeat 199 220
IPR002885 Pentatricopeptide_repeat 400 423
No external refs found!