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  5. Msp_g27398

Msp_g27398 (EMB2453, ATPPR5)


Aliases : EMB2453, ATPPR5

Description : not classified & original description: none


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g27398
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00175980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g48730,... 0.02 OrthoFinder output from all 47 species
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.06 OrthoFinder output from all 47 species
LOC_Os02g51480.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.05 OrthoFinder output from all 47 species
LOC_Os03g02430.1 LOC_Os03g02430 Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
LOC_Os03g19650.3 EMB2750, LOC_Os03g19650 Pentatricopeptide repeat-containing protein At3g06430,... 0.05 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Nbi_g07398 EMB2453, ATPPR5 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ore_g09304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16720 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39146 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo135826 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder output from all 47 species
Solyc01g006500.4.1 Solyc01g006500 Pentatricopeptide repeat-containing protein At5g48730,... 0.02 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.02 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Zm00001e032726_P001 EMB2750, Zm00001e032726 Pentatricopeptide repeat-containing protein At3g06430,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003873 6-phosphofructo-2-kinase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006000 fructose metabolic process IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 311 369
IPR002885 Pentatricopeptide_repeat 239 299
IPR002885 Pentatricopeptide_repeat 380 430
IPR002885 Pentatricopeptide_repeat 144 172
IPR002885 Pentatricopeptide_repeat 174 228
No external refs found!