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  5. Smo79650

Smo79650 (PACid_15403619)


Aliases : PACid_15403619

Description : 29.2.2.3.5 protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.DExD-box helicases encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl. hua enhancer 2 (HEN2) CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021) BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT1G59760.1) Has 9841 Blast hits to 8173 proteins in 1240 species: Archae - 753 Bacteria - 3176 Metazoa - 1197 Fungi - 1159 Plants - 489 Viruses - 32 Other Eukaryotes - 3035 (source: NCBI BLink). & (loc_os11g07500.1 : 1315.0


Gene families : OG_01_0000859 (Gene family) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo79650
Cluster HCCA cluster: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Gene family
Cre02.g117900 No alias 27.1 RNA.processing RNA helicase, ATP-dependent,... 0.02 Gene family
Cre06.g289950 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.01 Gene family
Cre11.g482483 No alias 28.99 DNA.unspecified RNA helicase, ATP-dependent,... 0.02 Gene family
LOC_Os02g06500 Os02g0160000 28.99 DNA.unspecified RNA helicase, ATP-dependent,... 0.02 Gene family
Solyc06g005990.3.1 Solyc06g005990.3 28.99 DNA.unspecified RNA helicase, ATP-dependent,... 0.05 Gene family
Zm00001d015314 GRMZM2G024882 28.99 DNA.unspecified RNA helicase, ATP-dependent,... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012961 Ski2_C 797 965
No external refs found!