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  5. Msp_g25796

Msp_g25796 (PDF2)


Aliases : PDF2

Description : HD-ZIP IV-type transcription factor & original description: none


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g25796
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00091460 ANL2, AHDP RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
AT1G05230 HDG2 homeodomain GLABROUS 2 0.08 OrthoFinder output from all 47 species
AT2G32370 HDG3 homeodomain GLABROUS 3 0.03 OrthoFinder output from all 47 species
AT4G04890 PDF2 protodermal factor 2 0.03 OrthoFinder output from all 47 species
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.02 OrthoFinder output from all 47 species
Adi_g057101 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05481 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g14063 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g18649 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13652 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15179 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23646 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25555 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07199 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g53005 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g62966 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07013 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21768 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69127.t1 PDF2, Aspi01Gene69127 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035524 PDF2 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g01321 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06562 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G001800.1 PDF2, Ceric.01G001800 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.04G065600.1 PDF2, Ceric.04G065600 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g07731 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g11376 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20177 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04977 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05023 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06153 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15559 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01027508001 ANL2, AHDP RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
GSVIVT01029396001 EDT1, HDG11, ATHDG11 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
LOC_Os02g45250.1 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
LOC_Os08g04190.1 PDF2, LOC_Os08g04190 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Len_g03368 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g11571 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g46600 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10318273g0010 HDG2 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
MA_10374232g0010 PDF2 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
MA_122121g0010 PDF2 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
MA_17048g0010 HDG5, HB-7 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
MA_93471g0010 ANL2, AHDP transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Ore_g11149 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19174 EDT1, HDG11, ATHDG11 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03228 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08965 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17562 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001922 ATML1 HD-ZIP IV-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Solyc03g098200.4.1 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Solyc06g072310.3.1 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Solyc07g041850.3.1 PDF2, Solyc07g041850 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Solyc12g005830.3.1 PDF2, Solyc12g005830 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Spa_g06195 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g07168 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09419 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16174 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g22119 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46298 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51145 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52321 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g13777 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31372 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43791 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e006870_P004 HDG2, Zm00001e006870 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e015997_P002 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Zm00001e039947_P001 HDG2, Zm00001e039947 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Zm00001e040312_P001 PDF2, Zm00001e040312 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Zm00001e041695_P001 PDF2, Zm00001e041695 transcription factor (HD-ZIP IV) 0.05 OrthoFinder output from all 47 species
Zm00001e042218_P002 HDG2, Zm00001e042218 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 308 535
IPR001356 Homeobox_dom 115 170
No external refs found!