Msp_g25744


Description : not classified & original description: none


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g25744

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00179320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Adi_g089268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20063 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g17130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G061400.1 Ceric.01G061400 not classified & original description: pacid=50592672... 0.04 OrthoFinder output from all 47 species
Ceric.11G091600.1 Ceric.11G091600 not classified & original description: pacid=50596008... 0.04 OrthoFinder output from all 47 species
Ceric.19G017900.1 Ceric.19G017900 not classified & original description: pacid=50576444... 0.03 OrthoFinder output from all 47 species
Dac_g22799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g09922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Len_g08870 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Msp_g06308 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g01326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09735 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g59517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g15128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17969 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003004 No alias not classified & original description: CDS=1-2094 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010895 No alias not classified & original description: CDS=1-2118 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017150 No alias not classified & original description: CDS=1-2094 0.03 OrthoFinder output from all 47 species
Sam_g10479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 489 625
IPR002885 Pentatricopeptide_repeat 110 140
IPR002885 Pentatricopeptide_repeat 170 221
IPR002885 Pentatricopeptide_repeat 431 482
No external refs found!