1. Home
  2. Species
  3. Microlepia speluncae
  4. Sequence
  5. Msp_g25541

Msp_g25541


Description : stability factor *(PPR10) & original description: none


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g25541

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.02 OrthoFinder output from all 47 species
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g02403 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07205 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02252 No alias stability factor *(PPR10) & original description: none 0.05 OrthoFinder output from all 47 species
MA_71865g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 OrthoFinder output from all 47 species
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 OrthoFinder output from all 47 species
Ppi_g17870 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g107320.3.1 Solyc01g107320 plastidial mRNA processing factor (PPR10) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 443 490
IPR002885 Pentatricopeptide_repeat 619 662
IPR002885 Pentatricopeptide_repeat 688 735
IPR002885 Pentatricopeptide_repeat 513 561
IPR002885 Pentatricopeptide_repeat 257 317
IPR002885 Pentatricopeptide_repeat 186 246
IPR002885 Pentatricopeptide_repeat 319 351
IPR002885 Pentatricopeptide_repeat 362 422
IPR002885 Pentatricopeptide_repeat 762 789
No external refs found!