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  5. Msp_g24420

Msp_g24420 (SYP125, ATSYP125)


Aliases : SYP125, ATSYP125

Description : Qa-type SYP1-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0000392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000392_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g24420

Target Alias Description ECC score Gene Family Method Actions
Als_g36578 ATSYP124, SYP124 Qa-type SYP1-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Aop_g09213 ATSYP124, SYP124 Qa-type SYP1-group component of SNARE membrane fusion... 0.05 OrthoFinder output from all 47 species
LOC_Os06g07200.1 SYP132,... SYP1-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species
Msp_g37798 SYP123, ATSYP123 Qa-type SYP1-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 39 242
IPR000727 T_SNARE_dom 244 295
No external refs found!