Msp_g23175


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g23175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.03 OrthoFinder output from all 47 species
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g004392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005655 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06917 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13621 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g13671 DOT4 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g17277 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g19488 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g21238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21902 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24410 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30728 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g35882 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g36210 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36510 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05696 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06392 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55287 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58851 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21628 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene03152.t1 Aspi01Gene03152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14838.t1 Aspi01Gene14838 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34713.t1 Aspi01Gene34713 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g012008 EMB2758 not classified & original description: CDS=1-2031 0.03 OrthoFinder output from all 47 species
Azfi_s0026.g023333 CRR22 not classified & original description: CDS=1-2235 0.05 OrthoFinder output from all 47 species
Azfi_s0028.g023827 No alias not classified & original description: CDS=1-3255 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025537 No alias ssDNA-binding protein *(OSB) & original description: CDS=167-2242 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025669 No alias not classified & original description: CDS=1-1770 0.04 OrthoFinder output from all 47 species
Azfi_s0039.g026394 OTP86 not classified & original description: CDS=1-2238 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030899 No alias not classified & original description: CDS=1-2946 0.03 OrthoFinder output from all 47 species
Azfi_s0062.g035166 No alias not classified & original description: CDS=1-3372 0.03 OrthoFinder output from all 47 species
Azfi_s0128.g048778 No alias not classified & original description: CDS=1-2676 0.04 OrthoFinder output from all 47 species
Azfi_s0151.g053374 No alias ssDNA-binding protein *(OSB) & original description: CDS=217-2670 0.04 OrthoFinder output from all 47 species
Azfi_s0154.g053510 No alias not classified & original description: CDS=1-2550 0.03 OrthoFinder output from all 47 species
Azfi_s0162.g054179 No alias not classified & original description: CDS=1-2562 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059832 No alias not classified & original description: CDS=1-2646 0.03 OrthoFinder output from all 47 species
Azfi_s0257.g060586 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Azfi_s0371.g067098 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2013 0.04 OrthoFinder output from all 47 species
Azfi_s0425.g069243 No alias not classified & original description: CDS=144-3230 0.03 OrthoFinder output from all 47 species
Cba_g06404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19473 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20779 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34537 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.06 OrthoFinder output from all 47 species
Ceric.04G068300.1 CRR22, Ceric.04G068300 not classified & original description: pacid=50630217... 0.05 OrthoFinder output from all 47 species
Ceric.05G019900.1 CRR22, Ceric.05G019900 not classified & original description: pacid=50578663... 0.05 OrthoFinder output from all 47 species
Ceric.07G078100.1 OTP84, Ceric.07G078100 not classified & original description: pacid=50626860... 0.06 OrthoFinder output from all 47 species
Ceric.10G043800.1 Ceric.10G043800 not classified & original description: pacid=50613534... 0.05 OrthoFinder output from all 47 species
Ceric.11G009800.1 Ceric.11G009800 not classified & original description: pacid=50594985... 0.05 OrthoFinder output from all 47 species
Ceric.17G073400.1 OTP86, Ceric.17G073400 not classified & original description: pacid=50617570... 0.05 OrthoFinder output from all 47 species
Ceric.1Z110500.1 Ceric.1Z110500 not classified & original description: pacid=50639205... 0.06 OrthoFinder output from all 47 species
Ceric.24G028500.1 Ceric.24G028500 not classified & original description: pacid=50629587... 0.05 OrthoFinder output from all 47 species
Ceric.27G070000.1 Ceric.27G070000 not classified & original description: pacid=50605490... 0.05 OrthoFinder output from all 47 species
Ceric.28G065700.1 CRR22, Ceric.28G065700 not classified & original description: pacid=50569957... 0.05 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.07 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.07 OrthoFinder output from all 47 species
Ceric.35G018800.1 Ceric.35G018800 not classified & original description: pacid=50580757... 0.05 OrthoFinder output from all 47 species
Ceric.35G061000.1 CRR22, Ceric.35G061000 not classified & original description: pacid=50581720... 0.05 OrthoFinder output from all 47 species
Dac_g02827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38506 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07608 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07713 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08260 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08636 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g08698 EMB2744 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g26235 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g33337 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g40896 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02867 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g15911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19384 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 OrthoFinder output from all 47 species
Gb_33693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_20746g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_452577g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g43041 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g10308 EMB2261 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10800 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06449 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g64554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07362 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023710 No alias not classified & original description: CDS=112-2235 0.03 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Spa_g14308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14608 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g15749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18928 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20091 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26699 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g26814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g31188 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g33289 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53482 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g53894 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g54465 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05629 OTP84 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g17460 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23441 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 23 70
IPR002885 Pentatricopeptide_repeat 125 173
IPR002885 Pentatricopeptide_repeat 227 276
IPR002885 Pentatricopeptide_repeat 295 326
IPR046848 E_motif 347 403
No external refs found!