Msp_g22642 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g22642

Target Alias Description ECC score Gene Family Method Actions
Adi_g099097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28513 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g05699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06346 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26401 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30417 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54506 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0011.g012554 No alias not classified & original description: CDS=1-2283 0.06 OrthoFinder output from all 47 species
Azfi_s0045.g029802 No alias not classified & original description: CDS=1-2208 0.05 OrthoFinder output from all 47 species
Cba_g04075 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g18613 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g19903 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g21419 EMB2744 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g78717 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.13G015700.1 Ceric.13G015700 not classified & original description: pacid=50636078... 0.05 OrthoFinder output from all 47 species
Ceric.22G042200.1 Ceric.22G042200 not classified & original description: pacid=50614742... 0.05 OrthoFinder output from all 47 species
Dac_g03825 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g13067 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18984 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14202 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17912 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g19449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15429 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g20494 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38465 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60422 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05340 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08791 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32285 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g43570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g44704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53031 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g53560 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g01746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16324 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g22684 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33278 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55201 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12958 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13649 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16803 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g25299 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g46233 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 62 84
IPR002885 Pentatricopeptide_repeat 368 392
IPR002885 Pentatricopeptide_repeat 162 187
IPR002885 Pentatricopeptide_repeat 469 495
IPR002885 Pentatricopeptide_repeat 266 288
IPR002885 Pentatricopeptide_repeat 88 134
IPR002885 Pentatricopeptide_repeat 190 236
IPR002885 Pentatricopeptide_repeat 496 542
IPR002885 Pentatricopeptide_repeat 393 440
IPR002885 Pentatricopeptide_repeat 291 338
No external refs found!