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  5. Msp_g20879

Msp_g20879


Description : not classified & original description: none


Gene families : OG0000198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g20879

Target Alias Description ECC score Gene Family Method Actions
AT1G26450 No alias Carbohydrate-binding X8 domain superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g33123 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g53561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G019700.1 Ceric.30G019700 not classified & original description: pacid=50608079... 0.03 OrthoFinder output from all 47 species
GSVIVT01020664001 PDCB5 PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os06g34660.1 PDCB5, LOC_Os06g34660 PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g13317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_962758g0010 No alias Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g41940 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g28709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015092 No alias not classified & original description: CDS=288-854 0.02 OrthoFinder output from all 47 species
Sam_g06583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g016390.4.1 Solyc05g016390 Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g03480 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g09804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012946 X8 87 159
No external refs found!