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  5. Msp_g20276

Msp_g20276


Description : not classified & original description: none


Gene families : OG0000954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000954_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g20276
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00208300 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G27650 No alias Tudor/PWWP/MBT superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g113339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05168 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11396 No alias EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Aob_g17586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g64510 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.03G017200.1 Ceric.03G017200 not classified & original description: pacid=50571554... 0.03 OrthoFinder output from all 47 species
Ceric.24G040200.1 Ceric.24G040200 not classified & original description: pacid=50630010... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.25 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre06.g270700 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g06515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01016344001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01031118001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01032455001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_11632 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_40891 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g38800.2 LOC_Os05g38800 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g20479 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g38053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_8546g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g02506 No alias EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Nbi_g13020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g06451 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g06983 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g02419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g45353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099360.3.1 Solyc01g099360 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g41391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13993 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g40244 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e027258_P002 Zm00001e027258 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e031849_P002 Zm00001e031849 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006784 heme A biosynthetic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046160 heme a metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 502 585
No external refs found!