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  5. Msp_g20109

Msp_g20109


Description : not classified & original description: none


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g20109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00193590 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
Adi_g126576 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19107 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0051.g031432 No alias not classified & original description: CDS=62-2137 0.04 OrthoFinder output from all 47 species
Cba_g17446 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01006302001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01009215001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01012710001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_00786 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_00787 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 63 257
IPR029413 RG-lyase_II 416 479
IPR029411 RG-lyase_III 498 685
No external refs found!