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  5. Msp_g19193

Msp_g19193 (COL9)


Aliases : COL9

Description : BBX class-II transcription factor & original description: none


Gene families : OG0001549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001549_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g19193
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00175490 evm_27.TU.AmTr_v1... Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aob_g05245 COL9 BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g18557 No alias BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.35G051200.1 COL9, Ceric.35G051200 BBX class-II transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01014591001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Nbi_g02311 No alias BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012315 COL9 BBX class-II transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc05g024010.3.1 Solyc05g024010 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Solyc12g006240.2.1 COL9, Solyc12g006240 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 517 559
No external refs found!