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  5. Msp_g19139

Msp_g19139 (UPL1)


Aliases : UPL1

Description : E3 ubiquitin ligase *(UPL1) & original description: none


Gene families : OG0001042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g19139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00211330 UPL1,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00061p00204480 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.04 OrthoFinder output from all 47 species
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.07 OrthoFinder output from all 47 species
Adi_g026954 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052147 UPL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077941 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107426 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04900 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g16628 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06583 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06863 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g14108 UPL1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g16302 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40877 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27017 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g26360 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene10348.t1 UPL1, Aspi01Gene10348 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0116.g046399 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=235-11562 0.04 OrthoFinder output from all 47 species
Cba_g36312 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.10G067500.1 UPL2, Ceric.10G067500 E3 ubiquitin ligase *(UPL1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.29G011900.1 UPL1, Ceric.29G011900 E3 ubiquitin ligase *(UPL1) & original description:... 0.04 OrthoFinder output from all 47 species
Cre01.g012450 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dac_g12923 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02070 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12771 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g04957 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05120 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009206001 UPL2 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01009208001 UPL2 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01014698001 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
Gb_17424 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
Gb_26785 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
LOC_Os09g07900.1 UPL1, LOC_Os09g07900 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
LOC_Os12g24080.1 UPL2, LOC_Os12g24080 monomeric E3 ubiquitin ligase (HECT) 0.05 OrthoFinder output from all 47 species
Len_g22981 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g23822 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
MA_20049g0010 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
MA_7295g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g21620.1 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
Mp7g16120.1 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.02 OrthoFinder output from all 47 species
Ore_g39369 UPL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41520 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44293 UPL2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57729 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g02429 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06511 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003603 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=387-11411 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0141.g022779 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=249-11528 0.04 OrthoFinder output from all 47 species
Sam_g37831 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g40563 No alias E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo154179 UPL2 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Solyc04g076620.4.1 UPL1, Solyc04g076620 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
Solyc07g065630.4.1 UPL1, Solyc07g065630 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g17792 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40173 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21189 UPL1 E3 ubiquiTin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e017836_P002 UPL1, Zm00001e017836 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species
Zm00001e039654_P001 UPL1, Zm00001e039654 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015940 UBA 1295 1332
IPR000569 HECT_dom 3508 3818
IPR025527 HUWE1/Rev1_UBM 2690 2713
IPR025527 HUWE1/Rev1_UBM 2761 2792
IPR025527 HUWE1/Rev1_UBM 2726 2752
IPR010309 E3_Ub_ligase_DUF908 86 367
IPR010314 E3_Ub_ligase_DUF913 427 789
No external refs found!