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  5. Msp_g18455

Msp_g18455 (SMG7)


Aliases : SMG7

Description : Nonsense-Mediated mRNA Decay protein *(SMG7) & original description: none


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g18455

Target Alias Description ECC score Gene Family Method Actions
Als_g15194 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Als_g23897 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.06 OrthoFinder output from all 47 species
Aob_g18594 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene41024.t1 SMG7, Aspi01Gene41024 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0113.g045981 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Ceric.27G021400.1 SMG7, Ceric.27G021400 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Cre16.g648750 SMG7 Protein SMG7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g16006 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g02039 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.08 OrthoFinder output from all 47 species
Dde_g41012 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os08g21350.1 SMG7, LOC_Os08g21350 SMG7 Nonsense-Mediated mRNA Decay protein 0.04 OrthoFinder output from all 47 species
Len_g28232 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Mp8g12080.1 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.08 OrthoFinder output from all 47 species
Ore_g13643 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g36629 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025727 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Solyc12g019960.2.1 SMG7, Solyc12g019960 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
Spa_g17881 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e009613_P002 SMG7, Zm00001e009613 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR019458 Est1-like_N 73 199
IPR018834 DNA/RNA-bd_Est1-type 212 547
No external refs found!