Aliases : EMB2758
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00098p00167700 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g50390,... | 0.04 | OrthoFinder output from all 47 species | |
AT3G62890 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Dac_g18379 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Dac_g42748 | CRR22 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g07698 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ehy_g20812 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os11g24530.1 | LOC_Os11g24530 | Pentatricopeptide repeat-containing protein At2g35030,... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g13680 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g16042 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g27428 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Pp3c6_28980V3.1 | Pp3c6_28980 | organellar single-stranded DNA binding protein 3 | 0.01 | OrthoFinder output from all 47 species | |
Smo116559 | No alias | Pentatricopeptide repeat-containing protein At3g09040,... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g20260 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Spa_g23985 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0043484 | regulation of RNA splicing | IEP | HCCA |
BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | HCCA |
BP | GO:0050684 | regulation of mRNA processing | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
BP | GO:1903311 | regulation of mRNA metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 686 | 778 |
IPR002885 | Pentatricopeptide_repeat | 437 | 464 |
IPR002885 | Pentatricopeptide_repeat | 546 | 570 |
IPR002885 | Pentatricopeptide_repeat | 468 | 516 |
IPR002885 | Pentatricopeptide_repeat | 25 | 72 |
IPR002885 | Pentatricopeptide_repeat | 331 | 378 |
IPR002885 | Pentatricopeptide_repeat | 229 | 276 |
IPR002885 | Pentatricopeptide_repeat | 127 | 174 |
No external refs found! |