Smo74321 (PACid_15409014)


Aliases : PACid_15409014

Description : 27.1.20 RNA.processing.degradation dicer Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein. dicer-like 4 (DCL4) CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021) BEST Arabidopsis thaliana protein match is: dicer-like 2 (TAIR:AT3G03300.3). & (chl4|519859 : 95.9


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo74321
Cluster HCCA cluster: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.03 Gene family
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.03 Gene family
LOC_Os01g68120 Os01g0909200 No description available 0.02 Gene family
LOC_Os04g43050 Os04g0509300 27.1.20 RNA.processing.degradation dicer Encodes an... 0.01 Gene family
MA_10436812g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.01 Gene family
MA_10437243g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
MA_10437243g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.03 Gene family
Solyc07g005030.3.1 Solyc07g005030.3 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Solyc08g067210.3.1 Solyc08g067210.3 No description available 0.02 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 300 415
No external refs found!