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  5. Cpa|evm.model.tig00000489.15

Cpa|evm.model.tig00000489.15


Description : 29.2.1.2.1.13 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S13 Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development ribosomal protein S13A (RPS13A)


Gene families : OG_01_0002050 (Gene family) Phylogenetic Tree(s): OG0002050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cpa|evm.model.tig00000489.15
Cluster HCCA cluster: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT3G60770 No alias Ribosomal protein S13/S15 0.08 Gene family
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.1 Gene family
Cre07.g331900 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.15 Gene family
GSVIVT01018537001 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.09 Gene family
GSVIVT01027637001 No alias 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.09 Gene family
LOC_Os07g38540 Os07g0572900 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.1 Gene family
LOC_Os08g02400 Os08g0117200 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.03 Gene family
LOC_Os08g02410 Os08g0117300 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.07 Gene family
Smo440805 PACid_15407822 No description available 0.06 Gene family
Solyc01g091220.3.1 Solyc01g091220.3 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.09 Gene family
Solyc03g083530.3.1 Solyc03g083530.3 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.07 Gene family
Solyc05g051000.3.1 Solyc05g051000.3 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.05 Gene family
Solyc10g018250.2.1 Solyc10g018250.2 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.05 Gene family
Solyc11g072260.2.1 Solyc11g072260.2 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.08 Gene family
Zm00001d035094 GRMZM5G852185 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.11 Gene family
Zm00001d049668 GRMZM2G112050 29.2.1.2.1.13 protein.synthesis.ribosomal... 0.09 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan
CC GO:0005622 intracellular IEA InterProScan
CC GO:0005840 ribosome IEA InterProScan
BP GO:0006412 translation IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 48
IPR000589 Ribosomal_S15 64 127
No external refs found!