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  5. Msp_g15857

Msp_g15857 (HSS, ARF1-BP, ARF2, ORE14)


Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g15857
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00141830 HSS, ARF1-BP,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00211p00025860 MP, IAA24, ARF5,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Adi_g011925 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20472 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11834 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33091 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49574 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07961 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12632 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12905 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38983.t1 ARF16, Aspi01Gene38983 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010679 ARF1 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Cba_g09882 ARF1 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.29G070000.1 ARF6, Ceric.29G070000 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g10952 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Gb_02925 ARF19, IAA22, ARF11 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os11g32110.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Len_g30364 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07818 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Pnu_g19455 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25160 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15721 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019239 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-3375 0.02 OrthoFinder output from all 47 species
Smo437944 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Spa_g12615 ARF16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39677 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010525 ARF_dom 294 376
IPR003340 B3_DNA-bd 169 270
IPR033389 AUX/IAA_dom 755 789
No external refs found!