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  5. Msp_g15718

Msp_g15718 (SDG30, ATX2)


Aliases : SDG30, ATX2

Description : not classified & original description: none


Gene families : OG0006147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g15718

Target Alias Description ECC score Gene Family Method Actions
Als_g59370 ATX3, SDG14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29506 ATX4, SDG16 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene11062.t1 Aspi01Gene11062 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g73011 ATX3, SDG14 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g37518 SDG30, ATX2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01035925001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_26322 SET29, SDG29, ATX5 Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10436998g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g26800.1 SDG30, ATX2 Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g22206 SDG30, ATX2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 1927 2034
IPR032308 TDBD 274 321
No external refs found!