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Msp_g15559 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g15559

Target Alias Description ECC score Gene Family Method Actions
Als_g61802 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s2326.g110592 PUM1, APUM1 not classified & original description: CDS=3742-4032 0.04 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01031557001 APUM6, PUM6 Pumilio homolog 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Len_g13786 APUM2, PUM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10434828g0010 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Smo86145 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 912 942
IPR001313 Pumilio_RNA-bd_rpt 766 798
IPR001313 Pumilio_RNA-bd_rpt 730 764
IPR001313 Pumilio_RNA-bd_rpt 993 1022
IPR001313 Pumilio_RNA-bd_rpt 874 909
IPR001313 Pumilio_RNA-bd_rpt 802 835
IPR001313 Pumilio_RNA-bd_rpt 844 869
IPR001313 Pumilio_RNA-bd_rpt 947 980
IPR012940 NABP 353 725
No external refs found!