Msp_g15106 (emb1507)

Aliases : emb1507

Description : RNA helicase *(Brr2) & original description: none

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g15106

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00114710	emb1507,...	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Adi_g117139	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g29910	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g04355	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene33378.t1	Aspi01Gene33378	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene33379.t1	Aspi01Gene33379	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g02389	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Gb_18049	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
Gb_27895	emb1507	RNA helicase (Brr2)	0.03	OrthoFinder output from all 47 species
MA_81219g0020	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.02	OrthoFinder output from all 47 species
Pir_g09832	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g36113	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e035676_P001	emb1507, Zm00001e035676	RNA helicase (Brr2)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0030246	carbohydrate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004179	Sec63-dom	1005	1307
IPR011545	DEAD/DEAH_box_helicase_dom	1352	1520
IPR001650	Helicase_C	738	881
IPR004179	Sec63-dom	1838	2156
IPR011545	DEAD/DEAH_box_helicase_dom	506	681
IPR041094	Brr2_helicase_PWI	267	376

External Links

No external refs found!