Msp_g15065 (SRCAP, PIE1, chr13)

Aliases : SRCAP, PIE1, chr13

Description : ATPase component *(PIE1) of SWR1 chromatin remodeling complex & original description: none

Gene families : OG0002986 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002986_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g15065

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00089520	SRCAP, PIE1,...	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
AT3G12810	SRCAP, PIE1, chr13	SNF2 domain-containing protein / helicase...	0.04	OrthoFinder output from all 47 species
Ala_g20021	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.06	OrthoFinder output from all 47 species
Ala_g21115	SRCAP, PIE1, chr13	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g04504	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.07	OrthoFinder output from all 47 species
Aop_g13991	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.22G011100.1	SRCAP, PIE1,...	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Dcu_g08326	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.07	OrthoFinder output from all 47 species
Ehy_g22840	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01033511001	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.04	OrthoFinder output from all 47 species
LOC_Os02g46450.2	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
MA_424432g0010	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
MA_64269g0010	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.02	OrthoFinder output from all 47 species
MA_9456975g0010	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.04	OrthoFinder output from all 47 species
Mp7g15670.1	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
Ppi_g56964	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005513	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Solyc03g063220.2.1	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
Spa_g09110	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Zm00001e015483_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.05	OrthoFinder output from all 47 species
Zm00001e023267_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	127	398
IPR001650	Helicase_C	652	764

External Links

No external refs found!

Msp_g15065 (SRCAP, PIE1, chr13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation